PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A00087.1.p

Common Name

EUGRSUZ_A00087

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 293aa MW: 33250 Da PI: 9.2699

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A00087.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7.2e-27	127	215	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++ra+tr gCka+++vk +++gkw++tk+++eHnH+l+ Eucgr.A00087.1.p 127 FYDEYARRVGFVMRVMSCRRSERDGKILARRLGCNKEGYCVSIRGKFGPVRKPRASTREGCKAMIHVKVDRSGKWVITKFVKEHNHPLV 215 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-24	127	215	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MNRQRISKKL NRTNRAEEKP MTGHGEWADD DGPVRPNSRD WPDPSIAAHQ AALLVMAVLA 60 FCSSRHRSPT KRSIKSQPIR IEPMDLEDEA GAAENSGGVE LVDCEGDPIV EPCEGMEFDS 120 EDAAKIFYDE YARRVGFVMR VMSCRRSERD GKILARRLGC NKEGYCVSIR GKFGPVRKPR 180 ASTREGCKAM IHVKVDRSGK WVITKFVKEH NHPLVISPRE ARQTMDEKDK KIEESMAELR 240 NKKRLCAAYQ EQLTAFVKIV EEHNDQLSKK VESVVNNIRK YEPVNPGLMR RS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A00087.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010064027.1	1e-166	PREDICTED: uncharacterized protein LOC104450980
TrEMBL	A0A059DBT8	0.0	A0A059DBT8_EUCGR; Uncharacterized protein
STRING	GLYMA06G48170.3	1e-109	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-106	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A00087.1.p